Question: Gene regulatory networks from expression data
gravatar for pixie@bioinfo
8 months ago by
pixie@bioinfo1.4k wrote:


I have RNA-seq data of a plant species. Is it possible to construct a gene-regulatory network, if I provide the transcription factor information ? Most of tools/papers talk about time-series data, but I have static data. I am not interested in co-expression networks. Any leads will be very helpful.

rna-seq network • 362 views
ADD COMMENTlink modified 7 months ago by Biostar ♦♦ 20 • written 8 months ago by pixie@bioinfo1.4k

Hi there, I can't understand what is your major goal? would you explain it more? how many data sets do you have? do they have control and treatment? what kind of network do you want ( co expression, gene regulatory network, pathway network,etc.)?

ADD REPLYlink written 8 months ago by Expert30

pixie@bioinfo, please follow up on these questions (by nfs.falsafi) - they are valid questions. Thanks! One of the main things on which you should elaborate is the format of the data that you have. For example, when you say 'transcription factor information', what, exactly, do you mean?

ADD REPLYlink modified 7 months ago • written 7 months ago by Kevin Blighe42k
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