What is the fastest protein structure alignment?
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3.0 years ago
rayoub ▴ 110

As the title suggest, I would like to know what is the fastest pairwise protein structure alignment tool available that still manages to be accurate. The best I know of currently is CE.

protein structure structure alignment • 543 views
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I can’t speak to speed, but you might be interested in TM-align. It performs well for global, accurate, structure alignment.

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The fastest won't be the most accurate. Define your metrics, how much accuracy is necessary?

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