I installed Kraken on Linux and was about to build the bacterial db. Unfortunately, the Jellyfish version installed was 2.2.8 which is not compatible with Kraken.
I uninstalled this version and tried to install the necessary 1.1.11 version through apt. Unfortunately it was not retrieved.
I download the tar.gz and tried to change the PATH variable but when I tried to enter the Kraken build command, it was still not effecting.
Could this also be a problem with Kraken and the threads required? What should be the ideal thread count?
Thanks in advance