Tutorial:Gene Set Enrichment Analysis on T-BioInfo
0
3
Entering edit mode
5.5 years ago
elia.brodsky ▴ 340

Gene Set Enrichment Analysis can help gain insight into RNA-seq data by comparing genes that are highly differentiated (i.e. found in the differential gene table) with known sets of genes, for example KEGG pathway database. Before using such methods, a simple diff. expression pipeline needs to be set up and run, for example using DESEQ2 or EDGER. These methods help select top genes with high fold-change and low p-value. The best selected gene then can be analyzed. To do all of this using the intuitive T-BioInfo interface can be really simple:

gene RNA-Seq • 3.6k views
ADD COMMENT
0
Entering edit mode

iframes are not allows, please use full links

ADD REPLY
0
Entering edit mode

How can one add a video tutorial?

ADD REPLY
0
Entering edit mode

Uploading to YouTube and posting a link here.

ADD REPLY
0
Entering edit mode

if you use a regular link to youtube.com the site will recognize it and embed it like so

your link is not recognized because it has that belgian extension youtu.be

ADD REPLY

Login before adding your answer.

Traffic: 2417 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6