I wish to perform variant analysis for exon capture data. The samples are human tissue samples. I already have the sequencing data and the list of exons to analyze. The exon co-ordinates are taken from the GCF_000001405.38 assembly.
I looked up on the UCSC genome browser and there the hg38 assembly version is GCA_000001405.15. So I looked up on NCBI and found this link to the latest version of the assembly.
In this, I have downloaded the GCF_000001405.38_GRCh38.p12_genomic.fna.gz file. Is this the correct reference or should I use the one on UCSC genome browser?
I will appreciate the guidance.