Question: How to convert Jaspar motif to input into homer?
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gravatar for a.rex
14 months ago by
a.rex190
a.rex190 wrote:

I want to use Homer to scan for a particular motif in my genome of interest (under ATAC peaks). This motif is found in Jaspar - how can I convert it to a format suitable for Homer?

jaspar homer • 740 views
ADD COMMENTlink modified 13 months ago by Biostar ♦♦ 20 • written 14 months ago by a.rex190

So you want to see if a certain motif is enriched in your peaks or you want to check and get position of a certain motif in the peaks? The latter is a job for fimo from the MEME suite.

ADD REPLYlink written 14 months ago by ATpoint28k
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