How to convert Jaspar motif to input into homer?
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5.7 years ago
a.rex ▴ 350

I want to use Homer to scan for a particular motif in my genome of interest (under ATAC peaks). This motif is found in Jaspar - how can I convert it to a format suitable for Homer?

homer jaspar • 3.4k views
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So you want to see if a certain motif is enriched in your peaks or you want to check and get position of a certain motif in the peaks? The latter is a job for fimo from the MEME suite.

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Hi, did you finally solve this problem? I met this too.

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18 months ago

I have used the R package universalmotif

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