Question: Read depth interval comparison
0
gravatar for rbronste
8 months ago by
rbronste240
rbronste240 wrote:

I was wondering about a good method to compare read depth at specific positions (bed file intervals) between two bam files and get as an output the depth across both bam files next to each interval in question? Thanks!

bedtools bam bedops bed read depth • 266 views
ADD COMMENTlink modified 8 months ago by Pierre Lindenbaum121k • written 8 months ago by rbronste240
1
gravatar for Pierre Lindenbaum
8 months ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum121k wrote:
samtools depth -b in.bed 1.bam 2.bam 3.bam 4.bam
ADD COMMENTlink written 8 months ago by Pierre Lindenbaum121k
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