Question: Read depth interval comparison
0
gravatar for rbronste
4 weeks ago by
rbronste230
rbronste230 wrote:

I was wondering about a good method to compare read depth at specific positions (bed file intervals) between two bam files and get as an output the depth across both bam files next to each interval in question? Thanks!

ADD COMMENTlink modified 4 weeks ago by Pierre Lindenbaum115k • written 4 weeks ago by rbronste230
0
gravatar for Pierre Lindenbaum
4 weeks ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum115k wrote:
samtools depth -b in.bed 1.bam 2.bam 3.bam 4.bam
ADD COMMENTlink written 4 weeks ago by Pierre Lindenbaum115k
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