Question: Read depth interval comparison
0
gravatar for rbronste
2.0 years ago by
rbronste360
rbronste360 wrote:

I was wondering about a good method to compare read depth at specific positions (bed file intervals) between two bam files and get as an output the depth across both bam files next to each interval in question? Thanks!

bedtools bam bedops bed read depth • 634 views
ADD COMMENTlink modified 2.0 years ago by Pierre Lindenbaum131k • written 2.0 years ago by rbronste360
1
gravatar for Pierre Lindenbaum
2.0 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum131k wrote:
samtools depth -b in.bed 1.bam 2.bam 3.bam 4.bam
ADD COMMENTlink written 2.0 years ago by Pierre Lindenbaum131k
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