Question: Meta-analysis GWAS using statistical summaries in numerous studies
1
gravatar for somayeh bakhshalizadeh
2.3 years ago by
Iran
somayeh bakhshalizadeh50 wrote:

Hi,

Can I analyze the GWAS meta-analysis using statistical summaries in numerous studies of about 60 articles with Plink software?

Since ID SNP and so on are different, is this workable?

snp plink • 756 views
ADD COMMENTlink modified 2.3 years ago by zx87549.9k • written 2.3 years ago by somayeh bakhshalizadeh50
1

Yes, you will have to match the SNP names from different datasets. Also, I prefer METAL for meta analysis.

ADD REPLYlink written 2.3 years ago by zx87549.9k

Thank you so much for your answer,

Do you know the database associated with GWAS livestock? Is this possible with statistical summaries available in the articles? This means that collected data from articles not from the database.

ADD REPLYlink written 2.2 years ago by somayeh bakhshalizadeh50
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