Question: Annotation tool for cnvKit
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gravatar for carolina.naomi
8 months ago by
carolina.naomi0 wrote:

I would like to annotate any variants found after running cnvkit.py with my samples. At first, I used cnvScan (https://github.com/PubuduSaneth/cnvScan) but the output is a little odd and I thought that it might not be suitable for cnvkit.

Does anyone know if I can use cnvScan with cnvkit? And if not, which tool is recommended?

cnv cnvscan cnvkit • 294 views
ADD COMMENTlink modified 8 months ago by geocarvalho110 • written 8 months ago by carolina.naomi0
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gravatar for geocarvalho
8 months ago by
geocarvalho110
Brazil/Recife
geocarvalho110 wrote:

Hello Naomi, other options that I know:

And if you want to take data from different sources, I recommend this article from Golden helix.

Best regards.

ADD COMMENTlink written 8 months ago by geocarvalho110
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