Question: (Closed) How to remove the nucleotide sequences that correspond to Illumina adapters?
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gravatar for rimgubaev
10 months ago by
rimgubaev140
Russia/Moscow/Skoltech
rimgubaev140 wrote:

How to remove the nucleotide sequence that correspond to adapters without removing the whole read?

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ADD COMMENTlink modified 10 months ago by ATpoint24k • written 10 months ago by rimgubaev140
1

The term you are looking for is "trimming". By searching for that you'll find plenty of tools :)

ADD REPLYlink written 10 months ago by WouterDeCoster41k

simply googling the exact phrase OP posted here already provided lots of tools ;)

ADD REPLYlink written 10 months ago by lieven.sterck6.0k

what have you tried (searched for) already, since this a very basic question.

ADD REPLYlink written 10 months ago by lieven.sterck6.0k

http://www.usadellab.org/cms/?page=trimmomatic ?

ADD REPLYlink written 10 months ago by Bastien Hervé4.4k

voila, this one for example :-)

though I prefer BBmap suite for this (trimmomatic has been reported to have some issues)

ADD REPLYlink modified 10 months ago • written 10 months ago by lieven.sterck6.0k

Hello rimgubaev!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

On the right of the page, you find a section "Similar posts"; and Biostars also has a search function. Keyword is "adapter trimming".

ADD REPLYlink modified 10 months ago • written 10 months ago by ATpoint24k
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