Genotype Extraction Format from VCF file
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5.4 years ago
MK2000 ▴ 30

When you extract genotype data for certain samples in a VCF file, is the resultant file in GT.FORMAT still technically a VCF file in itself? or if you wanted these extracted genotypes in their own vcf, do you somehow have to convert this to .vcf?

sequencing terminal VCF • 1.4k views
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it's not clear. Give use an example of "resultant file" and"extracted genotypes "

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5.4 years ago

While your question is unclear, if you select lines from your vcf and keep the header intact then yes, that's still a vcf. If you start to do more tampering than you are likely breaking the specfications.

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