Question: Cell density as a function of cortical depth
gravatar for keon.arbabi
4 months ago by
keon.arbabi0 wrote:


I am new to the community so please forgive any faux pas I commit.

I am looking to perform an automated cell count of in-situ hybridization labelled cells in the human cortex. More specifically, I would like to produce a density plot that communicates the pattern of labeling across the 6 cortical layers. Please find attached one of my ISH images and an example of the plot I would like to produce.

I would appreciate any information regarding what programs to use and process.

Thank you, Keon

Desired plot My ISH image

ADD COMMENTlink written 4 months ago by keon.arbabi0

Please see How to add images to a Biostars post to add your images properly. You need the direct link to the image, not the link to the webpage that has the image embedded (which is what you have used here)

ADD REPLYlink written 4 months ago by RamRS21k

This question would have a better chance of getting an answer on the forum.

EDIT: Just saw it was already crossposted there. Please avoid crossposting.

ADD REPLYlink modified 4 months ago • written 4 months ago by Jean-Karim Heriche18k

Hello keon.arbabi!

It appears that your post has been cross-posted to another site:

This is typically not recommended as it runs the risk of annoying people in both communities. Thanks for the heads up, Jean-Karim Heriche

ADD REPLYlink modified 4 months ago • written 4 months ago by RamRS21k
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