How to obtain mRNA splicing variants for a given chromosomal position?
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5.4 years ago
Neu ▴ 10

Hi, I have chromosomal location and I want to get all the mRNA spicing variants generated from the chromosomal position. Please suggest me what should I do.

R sequencing Assembly RNA-Seq Bioconductor package • 732 views
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Could you be a bit more specific - is it one position in the genome? or a loci? or a gene?

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"I have chromosomal location and I want to get all the mRNA spicing variants generated from the chromosomal position. Please suggest me what should I do." may be you have to look for transcript quantification go for kallisto it might give you head start

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