Question: Genotyped SNPs were lost after michigan imputation server imputation and phasing
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gravatar for Shicheng Guo
22 months ago by
Shicheng Guo8.4k
Shicheng Guo8.4k wrote:

Hi All,

I run a imputation and phasing with 'michigan imputation server' for exom-beadchip array data and I found some of genotyped SNPs in the exom-chip were lost in the output file. Is it common or I made some mistake in the option selection or others?

Thanks.

phasing michigan imputation • 743 views
ADD COMMENTlink written 22 months ago by Shicheng Guo8.4k

Check the output logs. The Michigan Imputation Server likely outputs a report of what was excluded, and why.

ADD REPLYlink written 22 months ago by Kevin Blighe66k
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