How to run locuszoom in Ubuntu 16.04
1
0
Entering edit mode
2.6 years ago
sjunlee89 • 0

I would like to run locuszoom in Ubuntu 16.04

the code as I ran is below.

mkdir locuszoom && cd locuszoom
wget https://statgen.sph.umich.edu/locuszoom/download/locuszoom_1.4_srconly.tgz
tar -zxvf locuszoom_1.4_srconly.tgz
cd locuszoom_1.4_srconly.tgz/
cp locuszoom /usr/local/bin/ && chmod a+x /usr/local/bin/locuszoom

On the other hand, after installation process, locuszoom was not running and I only saw this message.

locuszoom: commnad not found

How can I install locuszoom well and run this program in Ubuntu.

Thanks advanced.

software error • 1.0k views
ADD COMMENT
3
Entering edit mode
2.6 years ago
ATpoint 52k

If you copy the entire folder to bin, then the binary you call with locuszoom is still in the locuszoom/bin folder and therefore not in PATH. Either add locuszoom/bin to PATH or do cp locuszoom/bin/locuszoom /usr/bin.

ADD COMMENT
0
Entering edit mode

Thank you for your reply. It works very well.

ADD REPLY
0
Entering edit mode

is it normal when i run locuszoom? i saw error locuszoom +-------------------------------------------+ | LocusZoom 1.4 (05/01/2017) | | Plot regional association results | | from GWA scans or candidate gene studies | +-------------------------------------------+

Traceback (most recent call last): File "./locuszoom", line 28, in <module> main(); File "/home/XinkaiTong/software/locuszoom/bin/../src/m2zfast.py", line 2102, in main conf = getConf() File "/home/XinkaiTong/software/locuszoom/bin/../src/m2zfast.py", line 130, in getConf conf = Conf(conf_file) File "/home/XinkaiTong/software/locuszoom/bin/../src/m2zfast.py", line 119, in __init__ self._load(conf_file) File "/home/XinkaiTong/software/locuszoom/bin/../src/m2zfast.py", line 123, in _load execfile(file,conf_dict) TypeError: must be string, not None

ADD REPLY

Login before adding your answer.

Traffic: 2483 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6