Question: How do I identify which differentially expressed genes are on the cell surface?
0
gravatar for charlesgwellem
20 months ago by
charlesgwellem0 wrote:

I am very new to single cell sequencing and IPA analyses, but I have a background in R and Python programming. I have a set of differentially expressed genes from the single cell sequencing data of a cell type cultured alone under three conditions including the control condition. I have made use of this tutorial tutorial https://satijalab.org/seurat/pbmc3k_tutorial.html . My next task is to discover by IPA analyses, which of the differentially expressed genes are located on the cell surface (or is a surface marker). I am not so clear about how I can proceed and I will be very grateful for any help hints on the directions I can take.

Thank you all in advance for your contributions.

ADD COMMENTlink modified 20 months ago by Jean-Karim Heriche23k • written 20 months ago by charlesgwellem0
1
gravatar for Jean-Karim Heriche
20 months ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche23k wrote:

This question has been previously answered in this post.

ADD COMMENTlink written 20 months ago by Jean-Karim Heriche23k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 904 users visited in the last hour