How do I identify which differentially expressed genes are on the cell surface?

Question

[charlesgwellem]

I am very new to single cell sequencing and IPA analyses, but I have a background in R and Python programming. I have a set of differentially expressed genes from the single cell sequencing data of a cell type cultured alone under three conditions including the control condition. I have made use of this tutorial tutorial https://satijalab.org/seurat/pbmc3k_tutorial.html . My next task is to discover by IPA analyses, which of the differentially expressed genes are located on the cell surface (or is a surface marker). I am not so clear about how I can proceed and I will be very grateful for any help hints on the directions I can take.

Thank you all in advance for your contributions.

Answer 1

[Jean-Karim Heriche]

This question has been previously answered in this post.