Question: How to add Triticum aestivum snpEff4.3 genome database or appropriate wheat genome database in Galaxy for VCF annotation?
gravatar for pltbiotech_tkarthi
6 weeks ago by
CIMMYT, Mexico
pltbiotech_tkarthi110 wrote:

I added the T. aestivum snpEff4.3 genome database in Galaxy (, seems the database has been added as I could see theT. aestivum snpEff4.3 genome database at the right side history of Galaxy page column. But, when I add VCF file and snpEff4.3 wheat database, it's showing error. I would like to annotate the natural variants against the wheat genome (particularly against wheat homeolog 3DL). I also tried with VEP ENSEMBL, it is working, but I would like to try with Galaxy to see the annotations from Galaxy. Does anyone know about this?

genome • 153 views
ADD COMMENTlink modified 6 weeks ago • written 6 weeks ago by pltbiotech_tkarthi110

You should post this question over at Galaxy help site.

ADD REPLYlink written 6 weeks ago by genomax63k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1628 users visited in the last hour