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Question: Tool for rendering quick PNG/SVG/etc. from a single BED12 element?
1
gravatar for Alex Reynolds
15 days ago by
Alex Reynolds ♦ 27k
Seattle, WA USA
Alex Reynolds ♦ 27k wrote:

In attempting not to reinvent the wheel, are there any lightweight tools that take a single BED12 element and quickly render its intron/UTR/CDS structure and directionality?

I'm not looking for a heavyweight toolkit or framework that renders a static genome browser shot of multiple BED12 elements, but something that takes in an element and simply shows a rough sketch of its structure. Thanks for any tips!
bed12 visualization bed gene • 147 views
ADD COMMENT • link •
modified 15 days ago by Pierre Lindenbaum ♦ 116k • written 15 days ago by Alex Reynolds ♦ 27k
4
gravatar for Pierre Lindenbaum
15 days ago by
Pierre Lindenbaum ♦ 116k
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum ♦ 116k wrote:

a very basic html form converting a bed12 entry to SVG :

ADD COMMENT • link written 15 days ago by Pierre Lindenbaum ♦ 116k
1

This is quite handy for working into a React component. Many thanks.

ADD REPLY • link written 14 days ago by Alex Reynolds ♦ 27k
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