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• Pathway annotation using KEGG
  Dear all I need to annotate pathway of 3652 unique genes of a bacterial genome sequence. I have u...
• KEGG database query
  Dear all I have 1900 KEGG KO Ids like K03821, k21699 and so on . I have retrieved it for my geno...
• Convert KEGG KO ids
  Hi all, I just ran BlastKOALA and received my output which is basically a 2 column table with my...
• How to know the name of the pathways using KO numbers?
  Hi I have a list of about 2300 Ko numbers. How can I get the map of pathways using these KO numb...
• Pathway annotation using sequence alignment
  Dear all, I have 3652 bacterial protein sequences . I need to do pathway analysis. I have used B...
• KEGG BLASTKOALA parameters
  Has anyone worked with BLASTKOALA tool from KEGG. I have annotated my protein sequences using thi...
• Normalizing NGS samples expected to have different total reads
  Hello! I have MBD-seq datasets of Dnmt1 Knock-Out and control cells. As expected, Dnmt1 KO cov...
• KEGG Orthology linkage Pathways
  Hi All, I wanted to perform a functional analysis of my predicted ORFs of a metagenome. Using Bl...
• Fetch KO IDs for all genes in a genome using accession number only
  Hi, Using a Genbank (or Refseq) accession number, what is the best way to obtain the list of KOs...
• Microarray Time series data analysis through limma ?
  Dear all, I need to understand that whether my design matrix and analysis are correct or not. I ...
• bowtie2: ImportError: No module named argparse
  hi all, I am beginner for NGS analysis.I installed bowtie2 and when I run bowtie2 for indexing th...
• Local Galaxy: Need help with HISAT index builder
  Hello everybody, i recently installed a local galaxy version and added some tools via toolshed i...
• How To Blast Kegg-Only Data In The 'Nr' Database
  Hi there, I dont have a locally KEGG database bought,but I want to Blast my sequences against on...
• Intall local BLAST in Ubuntu
  We have a BLAST Online installation which get timeout for long FASTA sequences . I have searched ...
• How can I install numpy by avoiding following error?
  $:~/Documents/pythonWithPyham/Machine_learning/Randomforest/proposals$ pip install numpy bash: /...
• Genome annotation to KEGG KO ids
  I have a complete genome sequence of an organism well annotated. I want to get KO ids for eanch e...
• Installation Of Rnaspace
  I found great the RNAspace tool, so great that we decided to use in our workflow. But when I try...