Question: Is there a BlastKOALA local installation?
0
gravatar for 112498262
5 months ago by
1124982620
1124982620 wrote:

I would like to carry out a whole genome KO annotation of a bacterial genome using BlastKOALA but as far as I can find it is only available as a web service. Is it possible to install BlastKOALA locally or is there an alternative tool that assigns KO numbers?

Thanks in advance.

gene genome • 240 views
ADD COMMENTlink modified 5 months ago by anicet.ebou140 • written 5 months ago by 1124982620
1
gravatar for anicet.ebou
5 months ago by
anicet.ebou140
anicet.ebou140 wrote:

I don't know a way to have BlastKOALA installed locally. But I know another way to have KO annotation: KAAS automatic server here. And KAAS have a standalone version for Linux and Mac OS available at here.

ADD COMMENTlink written 5 months ago by anicet.ebou140

Thank you so much :)

ADD REPLYlink written 5 months ago by 1124982620

The structure and availability of data on the Sanger ftp site has changed so KAAS SA doesn't configure correctly.

ADD REPLYlink written 5 months ago by 1124982620

Ok I forward you a software recommendation but I didn't use it by myself: MEGAN6, Microbiome analysis using a single application. http://ab.inf.uni-tuebingen.de/software/megan6/. Hope It will help you.

ADD REPLYlink modified 5 months ago • written 5 months ago by anicet.ebou140
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