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Question: Is there a BlastKOALA local installation?
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gravatar for 112498262
5 months ago by
112498262 • 0
112498262 • 0 wrote:

I would like to carry out a whole genome KO annotation of a bacterial genome using BlastKOALA but as far as I can find it is only available as a web service. Is it possible to install BlastKOALA locally or is there an alternative tool that assigns KO numbers?

Thanks in advance.
gene genome • 240 views
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modified 5 months ago by anicet.ebou • 140 • written 5 months ago by 112498262 • 0
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gravatar for anicet.ebou
5 months ago by
anicet.ebou • 140
anicet.ebou • 140 wrote:

I don't know a way to have BlastKOALA installed locally. But I know another way to have KO annotation: KAAS automatic server here. And KAAS have a standalone version for Linux and Mac OS available at here.
ADD COMMENT • link written 5 months ago by anicet.ebou • 140

Thank you so much :)

ADD REPLY • link written 5 months ago by 112498262 • 0

The structure and availability of data on the Sanger ftp site has changed so KAAS SA doesn't configure correctly.

ADD REPLY • link written 5 months ago by 112498262 • 0

Ok I forward you a software recommendation but I didn't use it by myself: MEGAN6, Microbiome analysis using a single application. http://ab.inf.uni-tuebingen.de/software/megan6/. Hope It will help you.

ADD REPLY • link modified 5 months ago • written 5 months ago by anicet.ebou • 140
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