Question: Is there a BlastKOALA local installation?
0
gravatar for 112498262
11 months ago by
1124982620
1124982620 wrote:

I would like to carry out a whole genome KO annotation of a bacterial genome using BlastKOALA but as far as I can find it is only available as a web service. Is it possible to install BlastKOALA locally or is there an alternative tool that assigns KO numbers?

Thanks in advance.

gene genome • 474 views
ADD COMMENTlink modified 11 months ago by anicet.ebou160 • written 11 months ago by 1124982620
1
gravatar for anicet.ebou
11 months ago by
anicet.ebou160
anicet.ebou160 wrote:

I don't know a way to have BlastKOALA installed locally. But I know another way to have KO annotation: KAAS automatic server here. And KAAS have a standalone version for Linux and Mac OS available at here.

ADD COMMENTlink written 11 months ago by anicet.ebou160

Thank you so much :)

ADD REPLYlink written 11 months ago by 1124982620

The structure and availability of data on the Sanger ftp site has changed so KAAS SA doesn't configure correctly.

ADD REPLYlink written 11 months ago by 1124982620

Ok I forward you a software recommendation but I didn't use it by myself: MEGAN6, Microbiome analysis using a single application. http://ab.inf.uni-tuebingen.de/software/megan6/. Hope It will help you.

ADD REPLYlink modified 11 months ago • written 11 months ago by anicet.ebou160
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 917 users visited in the last hour