Question: Hi-c pro error in installation process
0
gravatar for dimitrischat
9 months ago by
dimitrischat90
dimitrischat90 wrote:

Hello all. I ve been trying to install Hic-pro. I have downloaded python 2.7.16 because >3 version isnt compatible. While typing in terminal "sudo make configure" in hic-pro folder i get Error: "pysam 0.7.7 detected. Version >= 0.8.3 required". I have tried pip install pysam, it reports: "Requirement already satisfied: pysam in /home/app/Desktop/apps/python/lib/python2.7/site-packages (0.15.2)". So it seems i have newer version than 0.8.3. In the config file for the python path i have : "/home/app/Desktop/apps/python/lib/python2.7" . I am lost. Any help ?

chip-seq • 322 views
ADD COMMENTlink modified 9 months ago • written 9 months ago by dimitrischat90
pip install -h

-U, --upgrade Upgrade all specified packages to the newest available version. The handling of dependencies depends on the upgrade-strategy used.

ADD REPLYlink written 9 months ago by ATpoint26k
pip install -U Python
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
Requirement already up-to-date: Python in ./Desktop/apps/python/lib/python2.7/lib-dynload (2.7.15)

pip install -U pysam
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
Requirement already up-to-date: pysam in ./Desktop/apps/python/lib/python2.7/site-packages (0.15.2)
ADD REPLYlink written 9 months ago by dimitrischat90
0
gravatar for dimitrischat
9 months ago by
dimitrischat90
dimitrischat90 wrote:

at last the pysam/python thing worked. but now i get this error : Please change the CLUSTER_SYS variable and re-run the installation process

ADD COMMENTlink written 9 months ago by dimitrischat90
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 702 users visited in the last hour