Question: Hi-c pro error in installation process
0
gravatar for dimitrischat
4 weeks ago by
dimitrischat60
dimitrischat60 wrote:

Hello all. I ve been trying to install Hic-pro. I have downloaded python 2.7.16 because >3 version isnt compatible. While typing in terminal "sudo make configure" in hic-pro folder i get Error: "pysam 0.7.7 detected. Version >= 0.8.3 required". I have tried pip install pysam, it reports: "Requirement already satisfied: pysam in /home/app/Desktop/apps/python/lib/python2.7/site-packages (0.15.2)". So it seems i have newer version than 0.8.3. In the config file for the python path i have : "/home/app/Desktop/apps/python/lib/python2.7" . I am lost. Any help ?

chip-seq • 111 views
ADD COMMENTlink modified 4 weeks ago • written 4 weeks ago by dimitrischat60
pip install -h

-U, --upgrade Upgrade all specified packages to the newest available version. The handling of dependencies depends on the upgrade-strategy used.

ADD REPLYlink written 4 weeks ago by ATpoint14k
pip install -U Python
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
Requirement already up-to-date: Python in ./Desktop/apps/python/lib/python2.7/lib-dynload (2.7.15)

pip install -U pysam
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
Requirement already up-to-date: pysam in ./Desktop/apps/python/lib/python2.7/site-packages (0.15.2)
ADD REPLYlink written 4 weeks ago by dimitrischat60
0
gravatar for dimitrischat
4 weeks ago by
dimitrischat60
dimitrischat60 wrote:

at last the pysam/python thing worked. but now i get this error : Please change the CLUSTER_SYS variable and re-run the installation process

ADD COMMENTlink written 4 weeks ago by dimitrischat60
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