Question: TCGA TMB: What exome size to use?
0
gravatar for ngs_engineer
17 months ago by
ngs_engineer0 wrote:

Hi everyone,

I am looking to calculate TMB for TCGA WES data and wonder what exome size should i use or if there is a way to get this information from TCGA.

Thanks!

wes • 1.1k views
ADD COMMENTlink modified 14 months ago by bastien.nguyen0 • written 17 months ago by ngs_engineer0

Did you get answer to your question? I have been trying to get this answer but so far didn't able to found that.

ADD REPLYlink written 10 months ago by always_learning1.0k
0
gravatar for bastien.nguyen
14 months ago by
New York
bastien.nguyen0 wrote:

Hi,

You can find TMB data from this paper in the following file; mutation-load-updated.txt

https://gdc.cancer.gov/about-data/publications/PanCan-CellOfOrigin

Best

ADD COMMENTlink written 14 months ago by bastien.nguyen0

Hello, mutation-load-updated.txt is log10 scale data? If I want TMP data do I need too sum silent and non-silent together?

ADD REPLYlink written 5 months ago by MatthewP680
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