how can i use the probability with Hidden Markov to predict the Cp G islands in DNA sequence (source code with python)
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See this post from 'Biostars': Find Cpg Islands
Apply Hidden Markov Model (Hmm) On Tiling Array
A few other articles:
Biostatistics. 2010 Jul; 11(3): 499–514.
Redefining CpG islands using hidden Markov models
Hao Wu, Brian Caffo, Harris A. Jaffee, and Rafael A. Irizarry*
Cpg-islands prediction in DNA
Note: All the code is mainly implemented in Python.
Finding CPGs islands in the sequence
4) And Stanford class as well: