I have a folder with multiple blast databases. I want to run blastn over all databases and produce one output for each database.
I'm trying something like that
for i in `find . -name 'name_of_database'`; do time blastn -db "$i" -query Sondas_100.fasta -out "$i".out -outfmt 7 -num_threads 16 -dust yes -ungapped done
But this options search for a filename, and the blast databases are alias
Any help with that?
Thank you so much