Submitting R package in Bioconductor with Plink and vcftools Dependencies
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5.2 years ago
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Hi All, I have written a program to analyze genotype SNP data in R and wanted to submit it as a bioconductor package. However, this package will be using Plink and vcftools and I was wondering if it is possible to submit it with such dependencies. Can someone please guide me though what I need to do to submit the bioconductor package with dependencies outside R. Thanks!

R bioconductor • 1.1k views
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If the package is using Plink and vcftools, maybe just exclude them and explain in the manuals that you need input to be in certain format.

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Posted at support.bioconductor, too.

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