I am doing WES analysis and want to do the QC after the realignment around the indels with qualimap2. My question is should I only use hg38 to see the coverage or I should also add a .bed file consisting the information of ONLY exons?
Question: Should I specify exome region to do the QC with qualimap2 for WES analysis?
4 weeks ago by
maria2019 • 20
maria2019 • 20 wrote:
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