Question: Structure produces no result
0
gravatar for rimgubaev
3 months ago by
rimgubaev120
Russia/Moscow/Skoltech
rimgubaev120 wrote:

If I run structure on my data (288 individuals, 8251 loci) it produces zero output. I also tried to replace "/" with "," as suggested here but still, it did not help.

When I try to run It on provided sample_data (200 individuals, 5 loci) structure does not upload the data and outputs the following error: "Bad Format in Data Source: Data entries are more than expected (7) at line 1". The number of individuals is specified in sample_parameters file and when I try to change the number of loci I still get the same error.

The version I use is 2.3.4

ADD COMMENTlink modified 3 months ago • written 3 months ago by rimgubaev120

Just tried to run the same task on 2.3.1. As a result I got absolutely the same problems.

ADD REPLYlink written 3 months ago by rimgubaev120

Can you provide an overview of how you processed your data? Questions on Structure are not common here. You may also consider contacting the developers directly.

ADD REPLYlink written 3 months ago by Kevin Blighe45k
1

I now use Plink+ADMIXTURE to make population structure barplot, it works fine. Maybe sometime I'll back to structure and contact developers directly.

ADD REPLYlink written 3 months ago by rimgubaev120
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1464 users visited in the last hour