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Question: Why there is no beta of SE output in some meta GWAS results?
0
gravatar for lilingjoyo
23 months ago by
lilingjoyo • 40
Japan
lilingjoyo • 40 wrote:

Hi all,

I want to use a summary statistics of a meta GWAS result. The meta analysis was performed by using META. In the summary statistic table, there are z-score and p-value columns, but no beta or SE columns. But I need beta as my input. Here is header of the summary table

SNP CHR BP  Allele1 Allele2 N   Zscore  P

I know that the conversion between beta and zscore is that:

zscore = beta / SE

How could I calculate beta based on provided info?
se beta meta gwas • 1.1k views
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modified 4 weeks ago by DM • 20 • written 23 months ago by lilingjoyo • 40

Do you mean METAL software?

ADD REPLY • link written 23 months ago by zx8754 ♦ 10.0k

Sorry, spelling mistake. Yeah, it's METAL.

ADD REPLY • link written 23 months ago by lilingjoyo • 40
0
gravatar for DM
4 weeks ago by
DM • 20
DM • 20 wrote:

Related post with answers

How to calculate effect(beta) and SE from z-score and p-value?

Caclulate effect estimates and SE from Z scores
ADD COMMENT • link written 4 weeks ago by DM • 20
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