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Question: Why there is no beta of SE output in some meta GWAS results?
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gravatar for lilingjoyo
20 months ago by
lilingjoyo • 30
Japan
lilingjoyo • 30 wrote:

Hi all,

I want to use a summary statistics of a meta GWAS result. The meta analysis was performed by using META. In the summary statistic table, there are z-score and p-value columns, but no beta or SE columns. But I need beta as my input. Here is header of the summary table

SNP CHR BP  Allele1 Allele2 N   Zscore  P

I know that the conversion between beta and zscore is that:

zscore = beta / SE

How could I calculate beta based on provided info?
se beta meta gwas • 953 views
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modified 20 months ago • written 20 months ago by lilingjoyo • 30

Do you mean METAL software?

ADD REPLY • link written 20 months ago by zx8754 ♦ 9.7k

Sorry, spelling mistake. Yeah, it's METAL.

ADD REPLY • link written 20 months ago by lilingjoyo • 30
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