Question: Why there is no beta of SE output in some meta GWAS results?
0
gravatar for lilingjoyo
20 months ago by
lilingjoyo30
Japan
lilingjoyo30 wrote:

Hi all,

I want to use a summary statistics of a meta GWAS result. The meta analysis was performed by using META. In the summary statistic table, there are z-score and p-value columns, but no beta or SE columns. But I need beta as my input. Here is header of the summary table

SNP CHR BP  Allele1 Allele2 N   Zscore  P

I know that the conversion between beta and zscore is that:

zscore = beta / SE

How could I calculate beta based on provided info?

se beta meta gwas • 953 views
ADD COMMENTlink modified 20 months ago • written 20 months ago by lilingjoyo30

Do you mean METAL software?

ADD REPLYlink written 20 months ago by zx87549.7k

Sorry, spelling mistake. Yeah, it's METAL.

ADD REPLYlink written 20 months ago by lilingjoyo30
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