Question: Why there is no beta of SE output in some meta GWAS results?
0
gravatar for lilingjoyo
23 months ago by
lilingjoyo40
Japan
lilingjoyo40 wrote:

Hi all,

I want to use a summary statistics of a meta GWAS result. The meta analysis was performed by using META. In the summary statistic table, there are z-score and p-value columns, but no beta or SE columns. But I need beta as my input. Here is header of the summary table

SNP CHR BP  Allele1 Allele2 N   Zscore  P

I know that the conversion between beta and zscore is that:

zscore = beta / SE

How could I calculate beta based on provided info?

se beta meta gwas • 1.1k views
ADD COMMENTlink modified 4 weeks ago by DM20 • written 23 months ago by lilingjoyo40

Do you mean METAL software?

ADD REPLYlink written 23 months ago by zx875410.0k

Sorry, spelling mistake. Yeah, it's METAL.

ADD REPLYlink written 23 months ago by lilingjoyo40
0
gravatar for DM
4 weeks ago by
DM20
DM20 wrote:

Related post with answers

How to calculate effect(beta) and SE from z-score and p-value?

Caclulate effect estimates and SE from Z scores

ADD COMMENTlink written 4 weeks ago by DM20
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