Question: error installation rmblast
0
gravatar for frida
7 weeks ago by
frida10
rome
frida10 wrote:

I'm getting errors when I run 'make install' for ncbi-blast-2.6.0+-src. The configure runs successfully, but here are the errors I get after running 'make install':

sudo make install
if test -d /home/o/RM/ncbi-blast-2.6.0+-src/c++/ReleaseMT/bin/gbench; then \
    make  install-gbench; \
else \
    make  install-toolkit; \
fi
make[1]: ingresso nella directory "/home/o/RM/ncbi-blast-2.6.0+-src/c++"
/bin/rm -rf /usr/local/rmblast/include/ncbi-tools++
/usr/bin/install -c -d /usr/local/rmblast/bin /usr/local/rmblast/lib /usr/local/rmblast/include/ncbi-tools++
/usr/bin/install -c /home/o/RM/ncbi-blast-2.6.0+-src/c++/ReleaseMT/bin/* /usr/local/rmblast/bin
/usr/bin/install -c -m 644 /home/o/RM/ncbi-blast-2.6.0+-src/c++/ReleaseMT/lib/*.* /usr/local/rmblast/lib
if test -d /home/o/RM/ncbi-blast-2.6.0+-src/c++/ReleaseMT/lib/ncbi; then \
    cp -pPR /home/o/RM/ncbi-blast-2.6.0+-src/c++/ReleaseMT/lib/ncbi /usr/local/rmblast/lib/; \
fi
rm -f /usr/local/rmblast/lib/lib*-static.a
cd /usr/local/rmblast/lib  && \
    for x in *.a; do \
        /bin/ln -s "$x" "`/usr/bin/basename \"$x\" .a`-static.a"; \
    done
cd /home/o/RM/ncbi-blast-2.6.0+-src/c++/include && find * -name CVS -prune -o -print |\
            cpio -pd /usr/local/rmblast/include/ncbi-tools++
51193 blocchi
/usr/bin/install -c -m 644 /home/o/RM/ncbi-blast-2.6.0+-src/c++/ReleaseMT/inc/* /usr/local/rmblast/include/ncbi-tools++
/usr/bin/install: directory '/home/o/RM/ncbi-blast-2.6.0+-src/c++/ReleaseMT/inc/common' omessa
Makefile:40: recipe for target 'install-toolkit' failed
make[1]: *** [install-toolkit] Error 1
make[1]: uscita dalla directory "/home/o/RM/ncbi-blast-2.6.0+-src/c++"
Makefile:62: recipe for target 'install' failed
repeatmasker blast • 132 views
ADD COMMENTlink modified 7 weeks ago by ATpoint16k • written 7 weeks ago by frida10
0
gravatar for ATpoint
7 weeks ago by
ATpoint16k
Germany
ATpoint16k wrote:
 conda install -c bioconda blast=2.6.0
ADD COMMENTlink modified 7 weeks ago • written 7 weeks ago by ATpoint16k

That would probably get OP the latest blast. This post is about repeatmasker which may need/want blast-2.6.0.

ADD REPLYlink modified 7 weeks ago • written 7 weeks ago by genomax67k

edited my post to ensure proper version

ADD REPLYlink written 7 weeks ago by ATpoint16k

Ok. Thank you! I'll try the same installing repeatmasker. :)

ADD REPLYlink written 7 weeks ago by frida10

Not sure if repeatmasker is available in conda. If it is then use it :-).

ADD REPLYlink written 7 weeks ago by genomax67k
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