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• Turning GO Terms to GO IDs
  I recently ran gene enrichment on a transcriptome set using Plant MetGenMap. The outputs gave me ...
• NextGene condensation alternative?
  I am bit curious about the novel condensation tool in NextGene from 2009. As it is being long yea...
• How to add GO pValue in blast2GO ?
  Hi, I want to use [REVIGO][1] **TreeMap** in order to summarize and visualize the GO terms relate...
• Clustering similiar GO terms
  Hi Friends, I just wanted to cluster the GO terms which has been generated from the GO annotatio...
• Summarizing GO terms
  I have a list of GO terms. I would like to summarize them like REVIGO does. I do not want to use ...
• What other programs produce visually captivating GO enrichment pictures?
  Hello, I have a list of enriched gene ontology (GO)- biological process terms. I am trying to av...
• DAVID functional Analysis and its visualization of GO terms using Bar plot
  Hello, I have used DAVID tool for the Functional annotation of my data (microarray data) and now...
• How to plot REVIGO r script
  Hello,    I've used REVIGO to analyze my GO data and I'd like to plot it in r using the "r scrip...
• Is there any sense to run condensation procedure on the unpaired seq reads?
  Is there any sense to run condensation procedure on the unpaired seq reads? .......................
• Recommend Some Software/Package For Go Enrichment & Visualization
  Hi Everyone I'm doing some transcriptome study,and got a bunch of transcript ID and correspondi...
• Go Terms Redundancy Remover
  Can anybody recommend a GO term redundancy removing stand alone software like the REVIGO Web serv...
• Going from BlastX to GO annotation
  Dear all, I have manually created a customized database on NCBI+ tools on a command line centOS ...
• Semantic Similarity selection in REVIGO: which is better? many clusters or few?
  Hi Biostars, There are 4 Semantic Similarity methods situated in [REVIGO][1] (Resnik, Lin, SimR...
• Go Term (Biological Process) At Level 4 For A Gene
  Dear all, I know this question has been asked before but I did not find any answer for this. I g...
• Plant Go Term Mapping And Meaningful Visualization
  Hi all: I have been involved in some medium-throughput work involving the retrieval of GO terms ...
• topGO use showSigOfNodes for non-topGO data? or: how to visualize GO graph from GOseq
  the topGO package appears to have a function showSigOfNodes, which plots the GO graph and highlig...
• How to go from Protein ID to EC number???
  We have a dataset consisting of 580-some proteins and are trying to condense it down by functiona...
• Go - Statistical Test
  Hi, I have done Gene Ontology Enrichment in REVIGO, returned with this values e.g.: term_ID ...