Question: dbGaP microarray datasets downloading
0
gravatar for naving2uk
13 months ago by
naving2uk10
United Kingdom
naving2uk10 wrote:

Hi,

Kindly i never used the dbGaP data sets, iam looking for gene expression data sets in :

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000424.v5.p1

I used to down load data from GEO which is micro-array expression data ( zip files) ,

but could not find the same format in dpgab

Please could you help

gene • 242 views
ADD COMMENTlink modified 13 months ago by genomax83k • written 13 months ago by naving2uk10

While there may be one set of Affymetrix data most of this data is from Illumina sequencing. You also need to have authorization to download this data. Instructions to get authorized are clearly linked under Important Links and Information on the page you linked.

ADD REPLYlink written 13 months ago by genomax83k

Yes, that is a next gen. sequencing study - GTEx. Do you need the 'raw' read files (FASTQ) or the raw counts? The raw counts are available free to the public on the main GTEx website.

ADD REPLYlink written 13 months ago by Kevin Blighe59k
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