Hello there, I am trying to analyse a dataset using kallisto and its abundances generated. thus, I am using tximport and want, then, use TPM counts and when I open the txi.kallisto.tsv files, essentially I have three different columns (i.e. 'abundances', 'counts' and 'length'). I am not sure whether the counts tximport pretend to import are normalized or not (i.e. TPM counts or not)??
thanks in advance