Please how do I use this expression to convert imputed snps data in dosage format to VCF format
java -jar beagle2vcf.jar [chrom] [markers] [bgl] [missing] > [vcf]
An example will give me a better understanding. I don't understand what the option [markers], [bgl], and [missing] actually stand for? where do I specify name of my input file, and what genotype and marker files to use?