Making random SNP with similar allele frequency and recombination rate to my SNP list
0
0
Entering edit mode
2.4 years ago
seta ★ 1.5k

Hi all,

For some tests, I would like to generate about 2000 random SNPs. As I found in some papers, the random SNP should have similar allele frequency and recombination rate to my SNP list. I have allele frequency of my SNP list, but no information about their recombination rate. Could you please help me out how I can generate such the random SNP list, 1000 times?

Thanks in advance

allele frequency random SNP population genetic • 451 views
ADD COMMENT
0
Entering edit mode

Depending on the data you have, you might try simcoal2 or genomepop.

ADD REPLY

Login before adding your answer.

Traffic: 2750 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6