Question: Error: Failed to open files
gravatar for leslie.ecker
4 months ago by
leslie.ecker0 wrote:

I'm trying update my phenotypes and gender. I use the comand line bellow, but appears the error: Error: Failed to open JSB_AX001toAX011_updatepheno. I checked many times my files and I can not understand wich the problem. Please, can you help me? Many Thanks!

C:\Users\leka_>plink --bfile C:\Users\leka_\Documents\DOUTORADO\gwas\Dataset\gwas_26032019\plink_binary_format\JSB_AX001toAX011_final --update-sex JSB_AX001toAX011_updatesex --make-pheno JSB_AX001toAX011_updatepheno 2 --make-bed --out JSB_AX001toAX011_update
PLINK v1.90b6.9 64-bit (4 Mar 2019)  
(C) 2005-2019 Shaun Purcell, Christopher Chang   GNU General Public License v3
Logging to JSB_AX001toAX011_update.log.
Options in effect:
  --bfile C:\Users\leka_\Documents\DOUTORADO\gwas\Dataset\gwas_26032019\plink_binary_format\JSB_AX001toAX011_final
  --make-pheno JSB_AX001toAX011_updatepheno 2
  --out JSB_AX001toAX011_update
  --update-sex JSB_AX001toAX011_updatesex

8050 MB RAM detected; reserving 4025 MB for main workspace.
920636 variants loaded from .bim file.
1019 people (0 males, 0 females, 1019 ambiguous) loaded from .fam.
Ambiguous sex IDs written to JSB_AX001toAX011_update.nosex .
Error: Failed to open JSB_AX001toAX011_updatepheno.
software error • 305 views
ADD COMMENTlink modified 4 months ago by Pierre Lindenbaum123k • written 4 months ago by leslie.ecker0

Please post the full output of “dir”.

ADD REPLYlink written 4 months ago by chrchang5235.5k
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