I have the WGS data from Illumina for a bacterial strain. I would like to do the following task,
- Compare the sequence of B. mayonii to other bacterial sequences that are deposited in NCBI. We are interested in knowing how the sequence of this strain compares to other Borrelia
- Determine if there are any AMR genes encoded on a plasmid.
How to accomplish both these tasks?
Any suggestions and relevant papers are welcomed.