Question: (Closed) How to get new SNP coordinate with new reference genome
0
gravatar for afli
16 months ago by
afli190
China, Beijing, IGDB
afli190 wrote:

Hi, I have a list of SNPs coordinates corresponding to IRGSP 4.0 reference genome, how can I get the right coordinates of these SNPs in another rice reference genome such as IRGSP 1.0 reference genome? Thank you very much!

Best, Aifu.

coordinate snp reference • 276 views
ADD COMMENTlink written 16 months ago by afli190
1

duplicate: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)

ADD REPLYlink written 16 months ago by Pierre Lindenbaum130k

Thank you for your kindly suggestion!

ADD REPLYlink written 16 months ago by afli190
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