Question: (Closed) How to get new SNP coordinate with new reference genome
gravatar for afli
7 months ago by
China, Beijing, IGDB
afli190 wrote:

Hi, I have a list of SNPs coordinates corresponding to IRGSP 4.0 reference genome, how can I get the right coordinates of these SNPs in another rice reference genome such as IRGSP 1.0 reference genome? Thank you very much!

Best, Aifu.

coordinate snp reference • 199 views
ADD COMMENTlink written 7 months ago by afli190

duplicate: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)

ADD REPLYlink written 7 months ago by Pierre Lindenbaum125k

Thank you for your kindly suggestion!

ADD REPLYlink written 7 months ago by afli190
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