Entering edit mode
4.0 years ago
hsu ▴ 40
Hi, I want to remove sepecific sequence in the 5' of my fastq file, these sequeces which I want to remove are not adapter sequences. I tried to use
cutadapt -g ATGCATTTTCG -o out.fq my.fq
But it's not working. Do you have any suggestions? Thank you !
Could you show us how the read with the desired sequence that needs trimming looks like? Your command works for me:
You can use
bbduk.shfrom BBMap suite this way.