Sorry if this is posted before, I've searched through the posts but none of them made me reach the solution, maybe I've missed it.
I have performed pathway over-representation on a set of genes and now trying to visualize the enrichment. However, I also want to filter out too specific gene ontology terms and also pick the parent term (when a parent and some child terms are present).
I have tried to do some visualizations with ClueGO and BiNGO by setting the maximum and minimum levels I wanted but could not get the clear results I wanted. That's why I'd like to group them first by keeping the parent one among my results. Does anyone know a tool that would make it for me? Otherwise, I feel like I need to check the GO ancestry of all of them one-by-one and decide to keep/remove manually which I assume would take quite a bit of time :)