Question: Ensembl Biomart overlap QTL regions and genes
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gravatar for Wietje
9 days ago by
Wietje200
Germany
Wietje200 wrote:

Hello fellow Biostars,

I have a Biomart related questions: I downloaded a number of QTL regions from the animalgenome DB and wanted to see which genes overlap with them. I filtered for multiple regions, which all worked fine - however I am unsure which overlap criteria were used and cannot find anothing on the matter in the documentation or FAQ. Does a gene hit mean that the QTL is completely imbedded within or would a partial intersection be sufficient, too?

I appreciate all help, thanks!

Cheers

biomart ensembl genome • 69 views
ADD COMMENTlink modified 5 days ago by Emily_Ensembl18k • written 9 days ago by Wietje200
1
gravatar for Emily_Ensembl
5 days ago by
Emily_Ensembl18k
EMBL-EBI
Emily_Ensembl18k wrote:

Any overlap, full or partial, is counted. You can test this for yourself by putting in a one base region that you know is within a gene: you'll get the gene back.

ADD COMMENTlink written 5 days ago by Emily_Ensembl18k
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