I am not able to understand what is the difference between
DESeq2 analysis for
amplicon microbial analysis.
I do have amplicon sequencing data from three treatment condition (T1, T2, and T3) and want to find the taxa which are differential abundant, currently I am using DESeq2 for that, but people also used PERMANOVA and DESeq2 both.
I am not able to understand how PERMANOVA analysis can be used and how it is different from DESeq2 analysis. Regards Bioinfonext