Question: Difference between PERMANOVA and DESeq2 analysis for amplicon sequencing
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gravatar for Bioinfonext
6 months ago by
Bioinfonext180
Korea
Bioinfonext180 wrote:

Hi,

I am not able to understand what is the difference between PERMANOVA and DESeq2 analysis for amplicon microbial analysis.

I do have amplicon sequencing data from three treatment condition (T1, T2, and T3) and want to find the taxa which are differential abundant, currently I am using DESeq2 for that, but people also used PERMANOVA and DESeq2 both.

I am not able to understand how PERMANOVA analysis can be used and how it is different from DESeq2 analysis. Regards Bioinfonext

bioconducter R • 238 views
ADD COMMENTlink modified 6 months ago • written 6 months ago by Bioinfonext180

Please see Brief Reminder On How To Ask A Good Question. Your question lacks any details on what kind of data you have and what the analysis is about. microbial analysis can be anything, please be more specific if you would like people to help you.

ADD REPLYlink written 6 months ago by ATpoint26k
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