Question: GUIDEseq data links dead in github
gravatar for joe
17 months ago by
joe140 wrote:

The GUIDEseq package on Github has a "large" test data set where there are links to download fastq data, however those links are now dead. Does anyone have this data? Willing to share? Thanks!

guideseq cas9 github crispr • 376 views
ADD COMMENTlink modified 14 months ago • written 17 months ago by joe140

You can create an issue on GitHub and let the author know about the broken links.

ADD REPLYlink written 17 months ago by genomax92k

Did that too, wrote here in case someone can easily share with me today!

Github = few eyes, Biostars = many eyes

ADD REPLYlink modified 17 months ago • written 17 months ago by joe140

I opened an issue on GitHub, which is still open as of this posting. If someone needs the raw data, you can see below (also posted on GitHub), although this is not the raw data, it will give you somewhere to start.

A temporary work-around for anyone following this thread is to download from the SRR dataset. I believe you can get this with the below cmd, if you have NCBI CLI tools installed. Although these are only the read fastq files and not the indexes...

fastq-dump SRR1695633 -split-files -O /OUTPUT/DIRECTORY

ADD REPLYlink written 16 months ago by joe140
gravatar for joe
14 months ago by
joe140 wrote:

At last, this was updated!

ADD COMMENTlink written 14 months ago by joe140
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