Question: GUIDEseq data links dead in github
0
gravatar for joe
11 months ago by
joe140
joe140 wrote:

The GUIDEseq package on Github has a "large" test data set where there are links to download fastq data, however those links are now dead. Does anyone have this data? Willing to share? Thanks!

http://aryee.mgh.harvard.edu/guideseq/data/guideseq_test_fastq.zip

guideseq cas9 github crispr • 295 views
ADD COMMENTlink modified 8 months ago • written 11 months ago by joe140

You can create an issue on GitHub and let the author know about the broken links.

ADD REPLYlink written 11 months ago by genomax83k

Did that too, wrote here in case someone can easily share with me today!

Github = few eyes, Biostars = many eyes

ADD REPLYlink modified 11 months ago • written 11 months ago by joe140

I opened an issue on GitHub, which is still open as of this posting. If someone needs the raw data, you can see below (also posted on GitHub), although this is not the raw data, it will give you somewhere to start. https://github.com/aryeelab/guideseq/issues/53

A temporary work-around for anyone following this thread is to download from the SRR dataset. I believe you can get this with the below cmd, if you have NCBI CLI tools installed. Although these are only the read fastq files and not the indexes...

fastq-dump SRR1695633 -split-files -O /OUTPUT/DIRECTORY

ADD REPLYlink written 10 months ago by joe140
0
gravatar for joe
8 months ago by
joe140
joe140 wrote:

At last, this was updated!

https://storage.googleapis.com/aryeelab/guideseq/guideseq_test_fastq.zip

https://github.com/aryeelab/guideseq/issues/53

ADD COMMENTlink written 8 months ago by joe140
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