I'm doing lots of analysis on sequencing of 16S RNAs by 454. In addition to self-made tools I've used MEGAN quite extensively and plan to test QIIME soon. Given how many other options are there (I know about RDP and WATERS) I wonder what is currently the best pipeline for such task? (with 454 in in mind)
Question: What Is The Best Pipeline For 16S Rna Metagenome Analysis?
8.6 years ago by
Pawel Szczesny ♦ 3.2k
Pawel Szczesny ♦ 3.2k wrote:
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4.3 years ago by
Simply Bioinformatics • 150
Simply Bioinformatics • 150 wrote:
Mothur has one of the best tutorials around,
if you are curious about each step of metagenome analysis
included brilliant step by step tutorial also
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