I am trying to run prepDE.py on remote server of my university but
There is an error
python: can't open file 'prepDE.py': [Errno 2] No such file or directory
Please advise an alternative to get the count matrix with stringtie.
I used the
-A option with stringtie and got individual count matrices for each file ( controlled and treated separately) I want to do DeSeq2
How do I proceed?
Please give inputs