Question: Consensus genotype of MUTECT1, MUTECT2, Varscan, Muse and Somaticsniper
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gravatar for Shicheng Guo
7 months ago by
Shicheng Guo8.0k
Shicheng Guo8.0k wrote:

Hi All,

Suppose I apply multiple methods such as MUTECT1, MUTECT2, Varscan, Muse and Somaticsniper to call mutations for one sample, How to merge them or how to obtain Consensus genotypes for this sample?

In the following Figure, I showed three method to call mutaiton for one sample and saved as VCF files. How to do the consensus for this sample (VCF file)?

Thanks

enter image description here

bcftools mutation consensus • 241 views
ADD COMMENTlink written 7 months ago by Shicheng Guo8.0k
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