Entering edit mode
5.5 years ago
endrebak
▴
980
426 rows in the GWAS catalogue contain x in the CHR_POS, like '31776605 x 95917441'
What does it mean?
426 rows in the GWAS catalogue contain x in the CHR_POS, like '31776605 x 95917441'
What does it mean?
For SNP-SNP interactions, all elements that are specific to a given SNP (rsID, risk allele, mapped gene, chromosome location etc) are separated by an "x" (eg "rs1336472-A x rs4715555-G")
From: https://www.ebi.ac.uk/gwas/docs/faq
Always try to check the documentations before asking a question on a forum, answers for most of the common questions are there.
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Thanks! I did read the file format specification :) Strange it said nothing there.
You are welcome :) (by the way, I meant no offense in my post)