Question: Coverage of exome
0
gravatar for fatemehpeymani
11 months ago by
fatemehpeymani10 wrote:

Guys, I am analyzing exome seq data. I have bam and sam file and I am wondering how could I get coverage from such files? I am looking for the number of reads with 10X 20X 30X coverage... Thanks in advance for your response

sequence next-gen alignment • 293 views
ADD COMMENTlink modified 11 months ago by Cookie-san90 • written 11 months ago by fatemehpeymani10
1

Check that Similar posts box on the right

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ADD REPLYlink written 11 months ago by ATpoint36k

Please change the type of the post to Question from Tutorial.

Additionally, have a read through Brief Reminder On How To Ask A Good Question

This may help as a starting point: Tools To Calculate Average Coverage For A Bam File?

ADD REPLYlink written 11 months ago by Sej Modha4.7k
1
gravatar for Cookie-san
11 months ago by
Cookie-san90
Cookie-san90 wrote:

You can use QualiMap :D

ADD COMMENTlink written 11 months ago by Cookie-san90
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