Question

Coverage of exome

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6.3 years ago

fatemehpeymani ▴ 10

Guys, I am analyzing exome seq data. I have bam and sam file and I am wondering how could I get coverage from such files? I am looking for the number of reads with 10X 20X 30X coverage... Thanks in advance for your response

alignment sequence next-gen • 1.3k views

ADD COMMENT • link updated 6.3 years ago by VBer ▴ 210 • written 6.3 years ago by fatemehpeymani ▴ 10

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Check that Similar posts box on the right

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ADD REPLY • link 6.3 years ago by ATpoint 89k

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Please change the type of the post to Question from Tutorial.

Additionally, have a read through Brief Reminder On How To Ask A Good Question

This may help as a starting point: Tools To Calculate Average Coverage For A Bam File?

ADD REPLY • link 6.3 years ago by Sej Modha 5.3k

score 1 · Answer 1 · 2019-07-16

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6.3 years ago

VBer ▴ 210

You can use QualiMap :D

ADD COMMENT • link 6.3 years ago by VBer ▴ 210