Question: RNA Seq V2 RSEM Data
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gravatar for archana.katta9000
20 months ago by
archana.katta90000 wrote:

I am unable to download the mRNA Expression z-Scores (RNA Seq V2 RSEM) for single gene from the cBioPortal website. I tried but it is showing, HTTP Status 500 – Internal Server Error.

rna-seq • 890 views
ADD COMMENTlink modified 7 weeks ago by Biostar ♦♦ 20 • written 20 months ago by archana.katta90000

Which gene and dataset?

ADD REPLYlink written 20 months ago by Kevin Blighe71k

Thank you so much for responding to my question, I need TCGA Combined Studies mRNA Expression z-Scores (RNA Seq V2 RSEM) for single mutation in a gene.

ADD REPLYlink modified 20 months ago • written 20 months ago by archana.katta90000

It would be better to contact cBioPortal.

ADD REPLYlink modified 19 months ago • written 19 months ago by Kevin Blighe71k

Thank you for suggestion, I will contact cBioPortal

ADD REPLYlink written 19 months ago by archana.katta90000

Thank you for your response, I should download a data of mutations expression for several genes but individually. Examples likeEGFR, ERBB2...Here am attaching a link where we will get an box plot for mutations expression, if we click on the bubble, we will get the expression data of single mutation. so could you please suggest me, how can we download the data for all mutations? Please Find the Following Link. https://www.cbioportal.org/results/expression?Action=Submit&RPPA_SCORE_THRESHOLD=2.0&Z_SCORE_THRESHOLD=2.0&cancer_study_list=laml_tcga_pan_can_atlas_2018%2Cacc_tcga_pan_can_atlas_2018%2Cblca_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018%2Cbrca_tcga_pan_can_atlas_2018%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018%2Cdlbc_tcga_pan_can_atlas_2018%2Cesca_tcga_pan_can_atlas_2018%2Cgbm_tcga_pan_can_atlas_2018%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Clihc_tcga_pan_can_atlas_2018%2Cluad_tcga_pan_can_atlas_2018%2Clusc_tcga_pan_can_atlas_2018%2Cmeso_tcga_pan_can_atlas_2018%2Cov_tcga_pan_can_atlas_2018%2Cpaad_tcga_pan_can_atlas_2018%2Cpcpg_tcga_pan_can_atlas_2018%2Cprad_tcga_pan_can_atlas_2018%2Csarc_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018%2Cstad_tcga_pan_can_atlas_2018%2Ctgct_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cucs_tcga_pan_can_atlas_2018%2Cucec_tcga_pan_can_atlas_2018%2Cuvm_tcga_pan_can_atlas_2018%2Cmsk_impact_2017&case_set_id=all&data_priority=0&gene_list=EGFR&geneset_list=%20&tab_index=tab_visualize.

ADD REPLYlink written 19 months ago by archana.katta90000

Mutation data for all samples for a particular cohort (LUSC, BRCA, et cetera) is availalble in MAF format at the Genomic Data Commons (GDC) Data Portal.

ADD REPLYlink written 7 weeks ago by Kevin Blighe71k
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