Question: Quantify expression from CAGE data
0
gravatar for jim_grigor
11 months ago by
jim_grigor0
jim_grigor0 wrote:

Hi,

I want to measure the expression level in (TPM) from CAGE data for some specific transcripts (i have their coordinates in annotation file). How can i aproach this and extract it in TPM?

Thanks in advance!

cage expression level • 204 views
ADD COMMENTlink modified 11 months ago • written 11 months ago by jim_grigor0

Can you please read your own question again and make a decision about the questions that you would ask you, if you were us?

ADD REPLYlink written 11 months ago by Kevin Blighe61k

You should state in which format you have the data. Fastq, Bam, count matrix...

ADD REPLYlink written 11 months ago by ATpoint36k
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