I want to measure the expression level in (TPM) from CAGE data for some specific transcripts (i have their coordinates in annotation file). How can i aproach this and extract it in TPM?
Thanks in advance!
Can you please read your own question again and make a decision about the questions that you would ask you, if you were us?
You should state in which format you have the data. Fastq, Bam, count matrix...
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