Question: Quantify expression from CAGE data
gravatar for jim_grigor
5 weeks ago by
jim_grigor0 wrote:


I want to measure the expression level in (TPM) from CAGE data for some specific transcripts (i have their coordinates in annotation file). How can i aproach this and extract it in TPM?

Thanks in advance!

cage expression level • 66 views
ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by jim_grigor0

Can you please read your own question again and make a decision about the questions that you would ask you, if you were us?

ADD REPLYlink written 5 weeks ago by Kevin Blighe47k

You should state in which format you have the data. Fastq, Bam, count matrix...

ADD REPLYlink written 5 weeks ago by ATpoint21k
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