Question: comparing kallisto rsem , makind sd plot and corelation table /graph
0
gravatar for yusuf
12 months ago by
yusuf50
Norway INN
yusuf50 wrote:

Hi,

I have count table from kallisto and rsem i want to compare them , need suggestions for it.

metafile

meta

kallisto count table

txi.kallisto

rsem count table

txi.rsem

DE deseq2

dds.k

res.k

dds.r

res.r

DE edgeR

etable.k

etable.r

I don't have reference genes to normalize I am trying to make SDplot NEplot any suggestions on how should I proceed.

ADD COMMENTlink modified 12 months ago by WouterDeCoster44k • written 12 months ago by yusuf50
1
gravatar for WouterDeCoster
12 months ago by
Belgium
WouterDeCoster44k wrote:

A good starting point would be this workflow. Feel free to open a new question if you have a more specific question afterward.

ADD COMMENTlink written 12 months ago by WouterDeCoster44k

hi thank you for your comment. I hve used this manual. i have xountmatri of kallisto and rsem< also i have deseq2 and edger results from kallisto and rsem, i want to plot sd of rsem and kallisto and neplot followed by correlation plot.

ADD REPLYlink written 12 months ago by yusuf50
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1692 users visited in the last hour